61: Burritt NL, Foss NJ, Neeno-Eckwall EC, Church JO, Hilger AM, Hildebrand JA,
Warshauer DM, Perna NT, Burritt JB. Sepsis and Hemocyte Loss in Honey Bees (Apis
mellifera) Infected with Serratia marcescens Strain Sicaria. PLoS One. 2016 Dec
21;11(12):e0167752. doi: 10.1371/journal.pone.0167752. eCollection 2016. PubMed
PMID: 28002470; PubMed Central PMCID: PMC5176276.
60: Sapountzis P, Gruntjes T, Otani S, Estevez J, da Costa RR, Plunkett G 3rd,
Perna NT, Poulsen M. The Enterobacterium Trabulsiella odontotermitis Presents
Novel Adaptations Related to Its Association with Fungus-Growing Termites. Appl
Environ Microbiol. 2015 Oct;81(19):6577-88. doi: 10.1128/AEM.01844-15. Epub 2015
Jul 10. PubMed PMID: 26162887; PubMed Central PMCID: PMC4561680.
59: Ma B, Charkowski AO, Glasner JD, Perna NT. Identification of host-microbe
interaction factors in the genomes of soft rot-associated pathogens Dickeya
dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine
learning. BMC Genomics. 2014 Jun 21;15:508. doi: 10.1186/1471-2164-15-508. PubMed
PMID: 24952641; PubMed Central PMCID: PMC4079955.
58: Byrne RT, Klingele AJ, Cabot EL, Schackwitz WS, Martin JA, Martin J, Wang Z,
Wood EA, Pennacchio C, Pennacchio LA, Perna NT, Battista JR, Cox MM. Evolution of
extreme resistance to ionizing radiation via genetic adaptation of DNA repair.
Elife. 2014 Mar 4;3:e01322. doi: 10.7554/eLife.01322. PubMed PMID: 24596148;
PubMed Central PMCID: PMC3939492.
57: Chung Y, Perna NT, Ané C. Computing the joint distribution of tree shape and
tree distance for gene tree inference and recombination detection. IEEE/ACM Trans
Comput Biol Bioinform. 2013 Sep-Oct;10(5):1263-74. doi: 10.1109/TCBB.2013.109.
PubMed PMID: 24384712.
56: Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT. Transcriptome
changes associated with anaerobic growth in Yersinia intermedia (ATCC29909). PLoS
One. 2013 Oct 7;8(10):e76567. doi: 10.1371/journal.pone.0076567. eCollection
2013. PubMed PMID: 24116118; PubMed Central PMCID: PMC3792023.
55: Baumler DJ, Ma B, Reed JL, Perna NT. Inferring ancient metabolism using
ancestral core metabolic models of enterobacteria. BMC Syst Biol. 2013 Jun
11;7:46. doi: 10.1186/1752-0509-7-46. PubMed PMID: 23758866; PubMed Central
PMCID: PMC3694032.
54: Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, Morovic W, Horvath
P, Heidenreich J, Perna NT, Barrangou R, Steele JL. Analysis of the Lactobacillus
casei supragenome and its influence in species evolution and lifestyle
adaptation. BMC Genomics. 2012 Oct 5;13:533. doi: 10.1186/1471-2164-13-533.
PubMed PMID: 23035691; PubMed Central PMCID: PMC3496567.
53: Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner
JD, Perna NT. Evolution of the metabolic and regulatory networks associated with
oxygen availability in two phytopathogenic enterobacteria. BMC Genomics. 2012 Mar
22;13:110. doi: 10.1186/1471-2164-13-110. PubMed PMID: 22439737; PubMed Central
PMCID: PMC3349551.
52: Baumler DJ, Banta LM, Hung KF, Schwarz JA, Cabot EL, Glasner JD, Perna NT.
Using comparative genomics for inquiry-based learning to dissect virulence of
Escherichia coli O157:H7 and Yersinia pestis. CBE Life Sci Educ. 2012
Spring;11(1):81-93. doi: 10.1187/cbe.10-04-0057. PubMed PMID: 22383620; PubMed
Central PMCID: PMC3292067.
51: Rio RV, Symula RE, Wang J, Lohs C, Wu YN, Snyder AK, Bjornson RD, Oshima K,
Biehl BS, Perna NT, Hattori M, Aksoy S. Insight into the transmission biology and
species-specific functional capabilities of tsetse (Diptera: glossinidae)
obligate symbiont Wigglesworthia. MBio. 2012 Feb 14;3(1). pii: e00240-11. doi:
10.1128/mBio.00240-11. Print 2012. PubMed PMID: 22334516; PubMed Central PMCID:
PMC3280448.
50: Hamilton JP, Neeno-Eckwall EC, Adhikari BN, Perna NT, Tisserat N, Leach JE,
Lévesque CA, Buell CR. The Comprehensive Phytopathogen Genomics Resource: a
web-based resource for data-mining plant pathogen genomes. Database (Oxford).
2011 Nov 26;2011:bar053. doi: 10.1093/database/bar053. Print 2011. PubMed PMID:
22120664; PubMed Central PMCID: PMC3225079.
49: Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT. The evolution of
metabolic networks of E. coli. BMC Syst Biol. 2011 Nov 1;5:182. doi:
10.1186/1752-0509-5-182. PubMed PMID: 22044664; PubMed Central PMCID: PMC3229490.
48: Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G,
Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G 3rd, San
Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P,
Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD,
Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X,
Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P,
Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT. Genome sequence of
the plant-pathogenic bacterium Dickeya dadantii 3937. J Bacteriol. 2011
Apr;193(8):2076-7. doi: 10.1128/JB.01513-10. Epub 2011 Jan 7. PubMed PMID:
21217001; PubMed Central PMCID: PMC3133054.
47: Darling AE, Mau B, Perna NT. progressiveMauve: multiple genome alignment with
gene gain, loss and rearrangement. PLoS One. 2010 Jun 25;5(6):e11147. doi:
10.1371/journal.pone.0011147. PubMed PMID: 20593022; PubMed Central PMCID:
PMC2892488.
46: Dufour YS, Wesenberg GE, Tritt AJ, Glasner JD, Perna NT, Mitchell JC, Donohue
TJ. chipD: a web tool to design oligonucleotide probes for high-density tiling
arrays. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W321-5. doi:
10.1093/nar/gkq517. Epub 2010 Jun 6. PubMed PMID: 20529880; PubMed Central PMCID:
PMC2896189.
45: Rodríguez-Palenzuela P, Matas IM, Murillo J, López-Solanilla E, Bardaji L,
Pérez-Martínez I, Rodríguez-Moskera ME, Penyalver R, López MM, Quesada JM, Biehl
BS, Perna NT, Glasner JD, Cabot EL, Neeno-Eckwall E, Ramos C. Annotation and
overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome
reveals the virulence gene complement of a tumour-inducing pathogen of woody
hosts. Environ Microbiol. 2010 Jun;12(6):1604-20. doi:
10.1111/j.1462-2920.2010.02207.x. Epub 2010 Apr 1. PubMed PMID: 20370821.
44: Sebaihia M, Bocsanczy AM, Biehl BS, Quail MA, Perna NT, Glasner JD, DeClerck
GA, Cartinhour S, Schneider DJ, Bentley SD, Parkhill J, Beer SV. Complete genome
sequence of the plant pathogen Erwinia amylovora strain ATCC 49946. J Bacteriol.
2010 Apr;192(7):2020-1. doi: 10.1128/JB.00022-10. Epub 2010 Jan 29. PubMed PMID:
20118253; PubMed Central PMCID: PMC2838050.
43: Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. Reordering
contigs of draft genomes using the Mauve aligner. Bioinformatics. 2009 Aug
15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10. PubMed
PMID: 19515959; PubMed Central PMCID: PMC2723005.
42: Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J,
Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D. Text-mining of
PubMed abstracts by natural language processing to create a public knowledge base
on molecular mechanisms of bacterial enteropathogens. BMC Bioinformatics. 2009
Jun 10;10:177. doi: 10.1186/1471-2105-10-177. PubMed PMID: 19515247; PubMed
Central PMCID: PMC2704210.
41: Harris DR, Pollock SV, Wood EA, Goiffon RJ, Klingele AJ, Cabot EL, Schackwitz
W, Martin J, Eggington J, Durfee TJ, Middle CM, Norton JE, Popelars MC, Li H,
Klugman SA, Hamilton LL, Bane LB, Pennacchio LA, Albert TJ, Perna NT, Cox MM,
Battista JR. Directed evolution of ionizing radiation resistance in Escherichia
coli. J Bacteriol. 2009 Aug;191(16):5240-52. doi: 10.1128/JB.00502-09. Epub 2009
Jun 5. PubMed PMID: 19502398; PubMed Central PMCID: PMC2725583.
40: Kim HS, Ma B, Perna NT, Charkowski AO. Phylogeny and virulence of naturally
occurring type III secretion system-deficient Pectobacterium strains. Appl
Environ Microbiol. 2009 Jul;75(13):4539-49. doi: 10.1128/AEM.01336-08. Epub 2009
May 1. PubMed PMID: 19411432; PubMed Central PMCID: PMC2704834.
39: Lindeberg M, Biehl BS, Glasner JD, Perna NT, Collmer A, Collmer CW. Gene
Ontology annotation highlights shared and divergent pathogenic strategies of type
III effector proteins deployed by the plant pathogen Pseudomonas syringae pv
tomato DC3000 and animal pathogenic Escherichia coli strains. BMC Microbiol. 2009
Feb 19;9 Suppl 1:S4. doi: 10.1186/1471-2180-9-S1-S4. Review. PubMed PMID:
19278552; PubMed Central PMCID: PMC2654664.
38: Glasner JD, Marquez-Villavicencio M, Kim HS, Jahn CE, Ma B, Biehl BS, Rissman
AI, Mole B, Yi X, Yang CH, Dangl JL, Grant SR, Perna NT, Charkowski AO.
Niche-specificity and the variable fraction of the Pectobacterium pan-genome. Mol
Plant Microbe Interact. 2008 Dec;21(12):1549-60. doi: 10.1094/MPMI-21-12-1549.
PubMed PMID: 18986251.
37: Ma B, Hibbing ME, Kim HS, Reedy RM, Yedidia I, Breuer J, Breuer J, Glasner
JD, Perna NT, Kelman A, Charkowski AO. Host range and molecular phylogenies of
the soft rot enterobacterial genera pectobacterium and dickeya. Phytopathology.
2007 Sep;97(9):1150-63. doi: 10.1094/PHYTO-97-9-1150. PubMed PMID: 18944180.
36: Mayhew GF, Bartholomay LC, Kou HY, Rocheleau TA, Fuchs JF, Aliota MT, Tsao
IY, Huang CY, Liu TT, Hsiao KJ, Tsai SF, Yang UC, Perna NT, Cho WL, Christensen
BM, Chen CC. Construction and characterization of an expressed sequenced tag
library for the mosquito vector Armigeres subalbatus. BMC Genomics. 2007 Dec
18;8:462. PubMed PMID: 18088419; PubMed Central PMCID: PMC2262096.
35: Darling AE, Treangen TJ, Messeguer X, Perna NT. Analyzing patterns of
microbial evolution using the mauve genome alignment system. Methods Mol Biol.
2007;396:135-52. PubMed PMID: 18025691.
34: Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V,
Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella
S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty
P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT. Enteropathogen
Resource Integration Center (ERIC): bioinformatics support for research on
biodefense-relevant enterobacteria. Nucleic Acids Res. 2008 Jan;36(Database
issue):D519-23. Epub 2007 Nov 13. PubMed PMID: 17999997; PubMed Central PMCID:
PMC2238966.
33: Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B,
Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M,
Shaull L, Shetty P, Shi C, Whitmore J, Wong M, Zaremba S, Blattner FR, Perna NT.
A new asset for pathogen informatics–the Enteropathogen Resource Integration
Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and
Emerging/Re-emerging Infectious Disease. Adv Exp Med Biol. 2007;603:28-42. PubMed
PMID: 17966403.
32: Mau B, Glasner JD, Darling AE, Perna NT. Genome-wide detection and analysis
of homologous recombination among sequenced strains of Escherichia coli. Genome
Biol. 2006;7(5):R44. Epub 2006 May 31. PubMed PMID: 16737554; PubMed Central
PMCID: PMC1779527.
31: Anderson BD, Gilson MC, Scott AA, Biehl BS, Glasner JD, Rajashekara G,
Splitter GA, Perna NT. CGHScan: finding variable regions using high-density
microarray comparative genomic hybridization data. BMC Genomics. 2006 Apr
25;7:91. PubMed PMID: 16638145; PubMed Central PMCID: PMC1464128.
30: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD,
Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE,
Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL. Escherichia coli K-12: a
cooperatively developed annotation snapshot–2005. Nucleic Acids Res. 2006 Jan
5;34(1):1-9. Print 2006. PubMed PMID: 16397293; PubMed Central PMCID: PMC1325200.
29: Glasner JD, Rusch M, Liss P, Plunkett G 3rd, Cabot EL, Darling A, Anderson
BD, Infield-Harm P, Gilson MC, Perna NT. ASAP: a resource for annotating,
curating, comparing, and disseminating genomic data. Nucleic Acids Res. 2006 Jan
1;34(Database issue):D41-5. PubMed PMID: 16381899; PubMed Central PMCID:
PMC1347526.
28: Yang S, Perna NT, Cooksey DA, Okinaka Y, Lindow SE, Ibekwe AM, Keen NT, Yang
CH. Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi
3937 using a GFP-based IVET leaf array. Mol Plant Microbe Interact. 2004
Sep;17(9):999-1008. PubMed PMID: 15384490.
27: Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of
conserved genomic sequence with rearrangements. Genome Res. 2004
Jul;14(7):1394-403. PubMed PMID: 15231754; PubMed Central PMCID: PMC442156.
26: Bartholomay LC, Cho WL, Rocheleau TA, Boyle JP, Beck ET, Fuchs JF, Liss P,
Rusch M, Butler KM, Wu RC, Lin SP, Kuo HY, Tsao IY, Huang CY, Liu TT, Hsiao KJ,
Tsai SF, Yang UC, Nappi AJ, Perna NT, Chen CC, Christensen BM. Description of the
transcriptomes of immune response-activated hemocytes from the mosquito vectors
Aedes aegypti and Armigeres subalbatus. Infect Immun. 2004 Jul;72(7):4114-26.
PubMed PMID: 15213157; PubMed Central PMCID: PMC427405.
25: Kudva IT, Griffin RW, Murray M, John M, Perna NT, Barrett TJ, Calderwood SB.
Insertions, deletions, and single-nucleotide polymorphisms at rare restriction
enzyme sites enhance discriminatory power of polymorphic amplified typing
sequences, a novel strain typing system for Escherichia coli O157:H7. J Clin
Microbiol. 2004 Jun;42(6):2388-97. PubMed PMID: 15184409; PubMed Central PMCID:
PMC427851.
24: Darling AE, Mau B, Blattner FR, Perna NT. GRIL: genome rearrangement and
inversion locator. Bioinformatics. 2004 Jan 1;20(1):122-4. PubMed PMID: 14693819.
23: Lathem WW, Bergsbaken T, Witowski SE, Perna NT, Welch RA. Acquisition of
stcE, a C1 esterase inhibitor-specific metalloprotease, during the evolution of
Escherichia coli O157:H7. J Infect Dis. 2003 Jun 15;187(12):1907-14. Epub 2003
Jun 4. PubMed PMID: 12792867.
22: Wei J, Goldberg MB, Burland V, Venkatesan MM, Deng W, Fournier G, Mayhew GF,
Plunkett G 3rd, Rose DJ, Darling A, Mau B, Perna NT, Payne SM, Runyen-Janecky LJ,
Zhou S, Schwartz DC, Blattner FR. Complete genome sequence and comparative
genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun. 2003
May;71(5):2775-86. Erratum in: Infect Immun. 2003 Jul;71(7):4223. PubMed PMID:
12704152; PubMed Central PMCID: PMC153260.
21: Glasner JD, Liss P, Plunkett G 3rd, Darling A, Prasad T, Rusch M, Byrnes A,
Gilson M, Biehl B, Blattner FR, Perna NT. ASAP, a systematic annotation package
for community analysis of genomes. Nucleic Acids Res. 2003 Jan 1;31(1):147-51.
PubMed PMID: 12519969; PubMed Central PMCID: PMC165572.
20: Welch RA, Burland V, Plunkett G 3rd, Redford P, Roesch P, Rasko D, Buckles
EL, Liou SR, Boutin A, Hackett J, Stroud D, Mayhew GF, Rose DJ, Zhou S, Schwartz
DC, Perna NT, Mobley HL, Donnenberg MS, Blattner FR. Extensive mosaic structure
revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc
Natl Acad Sci U S A. 2002 Dec 24;99(26):17020-4. Epub 2002 Dec 5. PubMed PMID:
12471157; PubMed Central PMCID: PMC139262.
19: Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong
T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin
J, Forrest D, Runnheim R, Churas C, Lamers C, Perna NT, Burland V, Blattner FR,
Mishra B, Schwartz DC. A whole-genome shotgun optical map of Yersinia pestis
strain KIM. Appl Environ Microbiol. 2002 Dec;68(12):6321-31. PubMed PMID:
12450857; PubMed Central PMCID: PMC134435.
18: Torres AG, Giron JA, Perna NT, Burland V, Blattner FR, Avelino-Flores F,
Kaper JB. Identification and characterization of lpfABCC’DE, a fimbrial operon of
enterohemorrhagic Escherichia coli O157:H7. Infect Immun. 2002
Oct;70(10):5416-27. PubMed PMID: 12228266; PubMed Central PMCID: PMC128367.
17: Torres AG, Perna NT, Burland V, Ruknudin A, Blattner FR, Kaper JB.
Characterization of Cah, a calcium-binding and heat-extractable autotransporter
protein of enterohaemorrhagic Escherichia coli. Mol Microbiol. 2002
Aug;45(4):951-66. PubMed PMID: 12180916.
16: Taylor DE, Rooker M, Keelan M, Ng LK, Martin I, Perna NT, Burland NT,
Blattner FR. Genomic variability of O islands encoding tellurite resistance in
enterohemorrhagic Escherichia coli O157:H7 isolates. J Bacteriol. 2002
Sep;184(17):4690-8. PubMed PMID: 12169592; PubMed Central PMCID: PMC135296.
15: Deng W, Burland V, Plunkett G 3rd, Boutin A, Mayhew GF, Liss P, Perna NT,
Rose DJ, Mau B, Zhou S, Schwartz DC, Fetherston JD, Lindler LE, Brubaker RR,
Plano GV, Straley SC, McDonough KA, Nilles ML, Matson JS, Blattner FR, Perry RD.
Genome sequence of Yersinia pestis KIM. J Bacteriol. 2002 Aug;184(16):4601-11.
PubMed PMID: 12142430; PubMed Central PMCID: PMC135232.
14: Okinaka Y, Yang CH, Perna NT, Keen NT. Microarray profiling of Erwinia
chrysanthemi 3937 genes that are regulated during plant infection. Mol Plant
Microbe Interact. 2002 Jul;15(7):619-29. PubMed PMID: 12118877.
13: Yang CH, Gavilanes-Ruiz M, Okinaka Y, Vedel R, Berthuy I, Boccara M, Chen JW,
Perna NT, Keen NT. hrp genes of Erwinia chrysanthemi 3937 are important virulence
factors. Mol Plant Microbe Interact. 2002 May;15(5):472-80. PubMed PMID:
12036278.
12: Kudva IT, Evans PS, Perna NT, Barrett TJ, DeCastro GJ, Ausubel FM, Blattner
FR, Calderwood SB. Polymorphic amplified typing sequences provide a novel
approach to Escherichia coli O157:H7 strain typing. J Clin Microbiol. 2002
Apr;40(4):1152-9. PubMed PMID: 11923324; PubMed Central PMCID: PMC140341.
11: Kudva IT, Evans PS, Perna NT, Barrett TJ, Ausubel FM, Blattner FR, Calderwood
SB. Strains of Escherichia coli O157:H7 differ primarily by insertions or
deletions, not single-nucleotide polymorphisms. J Bacteriol. 2002
Apr;184(7):1873-9. PubMed PMID: 11889093; PubMed Central PMCID: PMC134921.
10: Heimer SR, Welch RA, Perna NT, Pósfai G, Evans PS, Kaper JB, Blattner FR,
Mobley HL. Urease of enterohemorrhagic Escherichia coli: evidence for regulation
by fur and a trans-acting factor. Infect Immun. 2002 Feb;70(2):1027-31. PubMed
PMID: 11796646; PubMed Central PMCID: PMC127683.
9: Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R,
Skiadas J, Ramanathan A, Perna NT, Plunkett G 3rd, Burland V, Mau B, Hackett J,
Blattner FR, Anantharaman TS, Mishra B, Schwartz DC. Shotgun optical maps of the
whole Escherichia coli O157:H7 genome. Genome Res. 2001 Sep;11(9):1584-93. PubMed
PMID: 11544203; PubMed Central PMCID: PMC311123.
8: Perna NT, Plunkett G 3rd, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF,
Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao
Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca
J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR. Genome
sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature. 2001 Jan
25;409(6819):529-33. Erratum in: Nature 2001 Mar 8;410(6825):240. PubMed PMID:
11206551.
7: Ffrench-Constant RH, Waterfield N, Burland V, Perna NT, Daborn PJ, Bowen D,
Blattner FR. A genomic sample sequence of the entomopathogenic bacterium
Photorhabdus luminescens W14: potential implications for virulence. Appl Environ
Microbiol. 2000 Aug;66(8):3310-29. PubMed PMID: 10919786; PubMed Central PMCID:
PMC92150.
6: Burland V, Shao Y, Perna NT, Plunkett G, Sofia HJ, Blattner FR. The complete
DNA sequence and analysis of the large virulence plasmid of Escherichia coli
O157:H7. Nucleic Acids Res. 1998 Sep 15;26(18):4196-204. PubMed PMID: 9722640;
PubMed Central PMCID: PMC147824.
5: Perna NT, Mayhew GF, Pósfai G, Elliott S, Donnenberg MS, Kaper JB, Blattner
FR. Molecular evolution of a pathogenicity island from enterohemorrhagic
Escherichia coli O157:H7. Infect Immun. 1998 Aug;66(8):3810-7. PubMed PMID:
9673266; PubMed Central PMCID: PMC108423.
4: Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, Riley M,
Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick
HA, Goeden MA, Rose DJ, Mau B, Shao Y. The complete genome sequence of
Escherichia coli K-12. Science. 1997 Sep 5;277(5331):1453-62. PubMed PMID: 9278503.
Prior to UW-Madison
3: Perna NT, Kocher TD. Mitochondrial DNA: molecular fossils in the nucleus.
Curr Biol. 1996 Feb 1;6(2):128-9. Review. PubMed PMID: 8673455.
2: Perna NT, Kocher TD. Patterns of nucleotide composition at fourfold
degenerate sites of animal mitochondrial genomes. J Mol Evol. 1995
Sep;41(3):353-8. PubMed PMID: 7563121.
1: Perna NT, Batzer MA, Deininger PL, Stoneking M. Alu insertion polymorphism: a
new type of marker for human population studies. Hum Biol. 1992 Oct;64(5):641-8.
PubMed PMID: 1328024.